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Biotechnology

Two Kubernetes clusters migrated to Amazon EKS, without downtime.

For a small, long-established biotech company, we migrated two Kubernetes clusters from RKE1 to Amazon EKS, moved Jenkins to the cloud and switched deployments to GitOps with Rancher Fleet and HashiCorp Vault.

  • Amazon EKS
  • AWS
  • RKE1
  • Rancher Fleet
  • GitOps
  • Jenkins
  • HashiCorp Vault
  • Amazon EC2

01

The starting point

A small, long-established biotech company ran its applications in two Kubernetes clusters on AWS with RKE1. With RKE1 reaching end-of-life in 2025, a different Kubernetes distribution was needed. On top of that came legacy issues: the Jenkins agents for the functional tests still ran on a local server, Jenkins itself could no longer be updated because of old Java dependencies, and even small changes to the deployment pipeline took a lot of administration effort. Credentials, for example for the database, were managed decentrally in the repositories.

02

Our approach

  1. 01 Migration of both Kubernetes clusters from RKE1 to Amazon EKS, without downtime for ongoing operations
  2. 02 Moving the local Jenkins agents to an EC2 instance in AWS as a first step, so the local server can be switched off
  3. 03 Updating Jenkins and its agents to a current, supported version
  4. 04 Switching deployments from Jenkins to GitOps with Rancher Fleet, while the build pipeline for the Docker images stays in Jenkins
  5. 05 Central credential management in HashiCorp Vault

03

The result

  • Two clusters on Amazon EKS, migrated without downtime
  • A supported Kubernetes platform instead of a distribution at the end of its life cycle
  • Jenkins back on a supported version, and with it current security updates
  • Deployments via GitOps instead of a Jenkins pipeline that was costly to maintain
  • Credentials stored centrally and encrypted in HashiCorp Vault
  • The way is clear to switch off the local server

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